Transcriptional Regulatory Element Database

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Retrieve Promoters
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Gene Regulatory Networks
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Sequence Analysis Tools
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Sequence Matrix Search Page

Sequences for analysis
option 1, search/retrieve promoters for genes
option 2, search/retrieve promoters for TF target genes
option 3, enter your sequences in MULTI-FASTA format:
option 4, upload a text file:

Sequence matrix to search for
option 1, Select a matrix (from JASPAR db):
option 2, type in your Positional Weight Matrix in the box:
Sample matrix with 7 positions
in log likelihood format
Sample matrix (and priors) with 7 positions
in occurrence count format
A0.211.20-2.89-2.890.211.20-2.89
T0.56-2.891.200.44-2.89-2.89-2.89
C-2.15-2.25-2.89-2.89-2.89-2.89-2.89
G-0.951.61-2.890.911.21-2.891.78
A0.2510028000
T0.251104080
C0.251350000
G0.25085012412
Cutoff score to report a match
* default is 0 (report any hit with a positive score)

  
Michael Zhang Lab, Cold Spring Harbor Laboratory, all rights reserved
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