+ CONTACT

Zhang Lab

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Michael Zhang's Computational Biology Laboratory

SOFTWARES and TOOLS



Senstive and fast splice mapping for mRNA-seq reads: OLego


Exon inclusion ratio estimation from paired end RNAseq data: SpliceTrap


Motif discovery tool: POSMO and webPOSMO


Methylation prediction in human genome: HDMFinder


Transcription factor binding site (TFBS) motif discovery tool: DME


Human First Exon Finder: FirstEF


Comparing transcription factor binding sites (TFBS) position frequency matrices (PFMs):MatCompare


Exon Splicing Enhahcer Finder: ESEfinder


Comprehensive Regulatory Element Analysis and Discovery: CREAD


Gene-finding tool:
An Example: Using MZEF to find internal coding exons


Genomics of Transcriptional Regulation Website


Human Poly(A)-site Prediction


Human core-promoter prediction:
CorePromoter
CoreBoost
CoreBoost_HM


Human promoter mapping using CpG islands


Allele-specific DNA Methylation Analysis



Software Licensing (DME, MARSMotif, MARSMotif-M, SCPD, TRED)